Jakob Stender Guldberg — science enabler

Tools scientists actually run.

Small webapps, Python services, data workflows and source-grounded AI tools for biotech and bioinformatics teams — built to remove process drag without turning every task into a platform.

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20,000articles screened in 3 hours. The manual five-person workflow managed about 800 a week.

Weeks → minlab workflow turnaround, once spreadsheet handoffs became one internal tool.

Reproducible compute · Docker · Nix · Ansible · Slurm · CI

Regulated context · RBAC / ReBAC · GDPR · NIS2 · ISO 27001

Selected work

Selected work.

Applied AI, bioinformatics workflows, regulated platform engineering, and reproducible scientific compute.

Evaxion · scientific tooling

Research workflows made faster and safer

Screened 20,000 articles in 3 hours — the five-person manual workflow managed about 800 a week.

LLM screening · source-grounded RAG · LlamaIndex · pgvector

Replaced fragile research handoffs with internal tools for lab data, compute and service intake.

Streamlit · Ansible · Slurm · Azure AD · Grafana

Cut a lab workflow from weeks to minutes by turning messy inputs into a structured review path.

Structured input · validation boundaries · QC plots

SeeQ Diagnostics · bioinformatics

Research pipeline to operable workflow

Turned an expert-only Snakemake pipeline into an installable workflow that runs with one command.

Python packaging · Prefect · Snakemake

Made it safe to change: deterministic fixtures, CI regression runs, configuration validation, structured logs.

CI regression · validation fixtures · structured logging

Made the workflow reproducible across laptop, container and cluster.

uv · Nix · OCI images · Slurm

Client undisclosedRegTech startup · platform engineering

Typed platform foundations for regulated work

Built typed platform foundations across APIs, UI, background jobs, payments and schema migrations.

FastAPI · React · SQLAlchemy / Alembic · workers

Kept privileged operations server-side and modelled access across users, organisations and shared resources.

RBAC / ReBAC · organisation boundaries

Took the platform to NIS2 and ISO 27001 audit readiness.

Least privilege · audit trails · GDPR-sensitive contexts

Availability

Open to full-time roles.

Best fit: biotech, medtech, bioinformatics, scientific computing and regulated backends where a simple tool unlocks the science. Focused consulting when the problem is specific and technical.

Email me

jakob1379+jgalabs [at] gmail [dot] com